How to Migrate Your Synology NAS: 4 Methods Compared
Compare Synology Migration Assistant, HDD migration, Hyper Backup, and manual rsync. Includes cross-platform migration to TrueNAS and QNAP.
Whether you’re upgrading to a newer Synology, consolidating multiple NAS units, or moving to a different platform entirely, choosing the right migration method can save you days of downtime. This guide compares all four approaches and tells you when each one makes sense.
Method Comparison at a Glance
| Factor | Migration Assistant | HDD Migration | Hyper Backup | rsync / syncopio |
|---|---|---|---|---|
| Downtime | Moderate | High | Low | Lowest |
| Preserves config | Yes | Yes | Yes | Data only |
| Cross-platform | Synology only | Synology only | Limited | Any NAS |
| Network required | Yes | No (physical swap) | Yes | Yes |
| Incremental sync | No | No | Yes | Yes |
| Verification | No | No | Basic | Checksums |
| Complexity | Low | Low | Medium | Medium-High |
Method 1: Synology Migration Assistant
Best for: Synology-to-Synology upgrades when you want to preserve everything.
Migration Assistant is Synology’s built-in tool for migrating from one Synology NAS to another. It transfers data, shared folders, packages, and system configuration over the network.
How It Works
- Set up the new Synology with DSM
- Open Migration Assistant on the new NAS (Control Panel > Migration)
- Select the source NAS on your network
- Choose what to migrate (data, users, packages, configuration)
- Migration runs over the network — source remains readable during transfer
- Final sync requires source to be offline briefly
Pros
- Migrates everything: data, user accounts, shared folders, packages, Docker containers
- Minimal manual configuration on the new NAS
- Built into DSM — no extra software needed
Cons
- Synology-to-Synology only — can’t migrate to TrueNAS, QNAP, or generic Linux
- Source and destination must be on the same network
- No checksum verification — you’re trusting the process
- Not all packages are migratable (check Synology’s compatibility list)
- The source NAS must run DSM 6.2.2+ or 7.0+
Check compatibility first
Migration Assistant has specific model-to-model compatibility requirements. Check DSM > Migration Assistant > Compatible Models before starting.
Method 2: HDD Migration (Physical Disk Swap)
Best for: Upgrading hardware when you can tolerate downtime.
If you’re moving to a newer Synology model and the new unit supports the same drive format, you can physically move the drives.
How It Works
- Shut down the old NAS
- Remove the drives (note the order!)
- Insert drives into the new NAS in the same order
- Power on — DSM recognizes the existing volume
- DSM may prompt for an update — follow the wizard
Pros
- Fastest method for large datasets (no network copy)
- Preserves everything — volumes, data, configuration
- No network infrastructure needed
Cons
- Requires physical access to both NAS units
- Full downtime while drives are being swapped
- New NAS must support the existing RAID type and disk format
- Can’t resize volumes or change RAID type during migration
- Risky if drive bays have different physical layouts
Check drive compatibility
Not all Synology models use the same drive bay configuration. Verify that your destination model supports the same drive type (3.5” SATA, 2.5” SSD, NVMe) and bay count.
Method 3: Hyper Backup
Best for: Backup-and-restore workflows, especially when you want a verified copy before switching.
Hyper Backup is Synology’s backup tool. While not designed specifically for migration, it’s effective for moving data to another Synology or to any storage target.
How It Works
- Install Hyper Backup on the source NAS
- Create a backup task targeting the new NAS (or external storage)
- Run initial backup (can take hours/days for large datasets)
- Run incremental backups to catch changes
- On the new NAS, install Hyper Backup Vault
- Restore from the backup
Pros
- Incremental backups — only changed files transfer on subsequent runs
- Supports external USB drives, remote Synology, rsync-compatible servers, and cloud
- Backup integrity verification built in
- Can restore to a non-Synology target (rsync destination)
Cons
- Backup + restore is slower than direct copy (compression/decompression overhead)
- Restoring packages and configuration requires additional steps
- UI is designed for backup, not migration — the workflow is indirect
- Large initial backup can take days over slow networks
Method 4: Manual rsync / syncopio
Best for: Cross-platform migrations, maximum control, or when you need verification.
Using rsync (or syncopio) gives you the most control over the migration process. This is the only method that works across platforms — Synology to TrueNAS, QNAP to Synology, or any combination.
Using rsync via SSH
Enable SSH on the source Synology (Control Panel > Terminal & SNMP), then:
rsync -avz --progress \
admin@synology-source:/volume1/shared/ \
/destination/shared/
For preserving permissions and extended attributes:
rsync -avHAX --progress --stats \
admin@synology-source:/volume1/shared/ \
/destination/shared/
Using syncopio
- Add both NAS units as endpoints in syncopio (NFS or SMB)
- Create a migration job with source and destination datasets
- Run a discovery scan to analyze the data
- Start the migration — monitor progress in the web dashboard
- Run incremental syncs until cutover
- Final verification pass with checksums
Pros
- Cross-platform — works with any NAS that supports NFS, SMB, or SSH
- Incremental sync — run multiple pre-migration syncs with minimal downtime
- Checksum verification — confirm data integrity after transfer
- Full visibility — syncopio dashboard shows real-time progress
Cons
- Doesn’t migrate Synology packages, Docker containers, or system config
- Requires NFS/SMB exports or SSH access to be configured
- More setup than Migration Assistant for simple Synology-to-Synology upgrades
Cross-platform with visibility
syncopio handles the NFS/SMB mounting, progress monitoring, and checksum verification automatically. No rsync flags to remember, no log files to parse. See all features.
Cross-Platform Migration Guide
Synology to TrueNAS
- Export NFS shares from Synology (Control Panel > File Services > NFS)
- Create datasets on TrueNAS (Storage > Pools > Add Dataset)
- rsync or syncopio the data across
- Recreate shares on TrueNAS (Sharing > NFS / SMB)
- Update DNS/mount points for client access
Synology to QNAP
- Enable NFS on both NAS units
- Create shared folders on QNAP matching the Synology structure
- rsync or syncopio the data
- Recreate user accounts on QNAP
- Test ACL/permission mapping before cutover
Any NAS to Any NAS
The universal approach:
- Enable NFS or SMB on both source and destination
- Use rsync (CLI) or syncopio (web UI) for the transfer
- Run incremental syncs to minimize cutover window
- Verify with checksums
- Update client mount points
For the complete methodology, see our Data Migration Complete Guide.
Choosing the Right Method
| Your Situation | Recommended Method |
|---|---|
| Synology → same-gen Synology, small data | Migration Assistant |
| Hardware upgrade, can tolerate downtime | HDD Migration |
| Need a verified backup before switching | Hyper Backup |
| Cross-platform migration (any NAS) | rsync / syncopio |
| Large dataset (50TB+), need visibility | syncopio |
| Multiple NAS units → single destination | syncopio |
Further Reading
- Data Migration: The Complete Guide — end-to-end methodology
- Setting Up NFS Exports — configure NFS on any platform
- The Complete rsync Guide — master rsync for migrations
- NFS vs SMB: When to Use Each — protocol selection